- E -
- eastern equine encephalomyelitis virus
- EB virus
- Ebola virus
- Ebola virus Reston
- Ebola virus Sudan
- Ebola virus Zaire
- ECBO virus
- ECDO virus
- ECHO virus
- ECHO virus, types 1, 12, 28
- ECMO virus
- ecotropic virus
- ECSO virus
- ecthyma infectiosum virus
- ectromelia virus
- EEE virus
- EMC virus
- emerging virus
- emerging viruses
- encephalitis virus
- encephalomyocarditis virus
- enteric cytopathogenic bovine orphan virus
- enteric cytopathogenic human orphan virus
- enteric cytopathogenic monkey orphan virus
- enteric cytopathogenic swine orphan virus
- enteric orphan virus
- enteric viruses
- entomopox virus
- enzootic encephalomyelitis virus
- ephemeral fever virus
- epidemic gastroenteritis virus
- epidemic keratoconjunctivitis virus
- epidemic myalgia virus
- epidemic parotitis virus
- epidemic pleurodynia virus
- Epstein-Barr virus (EBV)
- equine abortion virus
- equine arteritis virus
- equine coital exanthema virus
- equine encephalomyelitis virus
- equine infectious anemia virus
- equine influenza virus
- equine rhinopneumonitis virus
- exanthem subitum virus
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